a function for gss analysis description

a function for gss analysis description

printGSS(object, threshold)

Arguments

object	a dataframe to describe from fitGSS() function
threshold	numeric, a threshold for Kullback-Leibler projection

Value

a description

Details

the input object is a fitGSS result and printGSS() prints the 2nd element of it (a dataframe with the Kullback-Leibler projection). The colnames of this dataframe are Genosce, ratio, kl, check. The outlier curves are identified with the Kullback-Lleiber distance higher than a given threshold, see (Gu, 2014). Final identification of outlier is done by an operator over genotypes when the test is significant.

See also

ssanova

Examples

data(plant1)
selec<-c("Lo1199_H","Lo1124_H","Lo1038_H","A3_H")
mydata<-plant1[plant1[,"genotypeAlias"] %in% selec,]
fm1<-fitGSS(datain=mydata,trait="biovolume",loopId="genotypeAlias")
 printGSS(object=fm1,threshold=0.05)
#> [1] genotypeAlias ratio         kl            check        
#> <0 lignes> (ou 'row.names' de longueur nulle)