a function for representing a trait in the phenoarch greenhouse

imageGreenhouse(
  datain,
  trait,
  xcol,
  ycol,
  numrow,
  numcol,
  daycol = NULL,
  typeD,
  typeT = 1,
  ylim = NULL,
  typeI = "ggplot2",
  typeV = NULL
)

Arguments

datain	a dataframe to explore
trait	character, a parameter to draw
xcol	character, name of the abscissa column ("Line" or "x"...)
ycol	character, name of the ordinate column ("Position" or "y"...)
numrow	numeric, number of rows in the greenhouse
numcol	numeric, number of columns in the greenhouse
daycol	character, name of the day time column ("Day" or "Time"...) necessary for video call.
typeD	numeric, type of dataframe (1==wide, 2==long). If typeD==2, the input dataset must contain a 'Trait' column.
typeT	numeric, type of the trait (1: quantitatif, 2: qualitatif), 1 is the default
ylim	if trait is quantitative, numeric vectors of length 2, giving the trait coordinates ranges. default = NULL
typeI	character, type of image. "video" for createDynam.R program that produces a video of an experiment, "plotly" for interactive graphic for spatial visualisation, "ggplot2" for classical graphic in report pdf , default.
typeV	character, type de video, NULL by default, "absolute" for abs. video

Value

a ggplot2 object if plotly, the print of the ggplot2 object (a graph) otherwise

Details

the data.frame in input must have the positions of each pot (Line and Position columns).

For plotly type graphic, the data frame in input must also contain id of plants (Manip, Pot, Genotype, Repsce)

Examples

# \donttest{
library(dplyr)
# a video call
library(dplyr)
selec<-"2017-04-14"
# in PAdata, daycol=="Time"
imageGreenhouse(datain=filter(PAdata,Time==selec),trait="Height_Estimated",
                 xcol="Row",ycol="Col",numrow=28,numcol=60,daycol="Time",
                 typeD=1,typeT=1,ylim=NULL,typeI="video")
# an interactive plotly call
test<-imageGreenhouse(datain=plant4, trait="Biomass24",xcol="Line",ycol="Position",
                 numrow=28,numcol=60,
                 typeD=1,typeT=1, ylim=NULL,typeI="plotly")
# test is a ggplot2 object, you have to render it with: plotly::ggplotly(test)
# a classical ggplot2 call
imageGreenhouse(datain=plant4, trait="Biomass24",xcol="Line",ycol="Position",
                numrow=28,numcol=60,typeD=1,typeT=1, ylim=NULL,typeI="ggplot2")
# }